Samantaray P K, Baloda S, Madras G, Bose S. "Nano-delivery in Scrolls based Nano-carriers: Efficient Constructs for Sustainable Scavenging of Heavy Metal Ions and Inactivate Bacteria", ACS Sustainable Chem Eng. DOI: 10.1021/acssuschemeng.9b02916
Sarkar S, Sinha S K, Levine H, Jolly M K, Dutta P S. "Anticipating critical transitions in epithelial–hybrid-mesenchymal cell-fate determination", PNAS. DOI: 10.1073/pnas.1913773116
Verma T, Podder S, Mehta M, Singh S, Singh A, Umapathy S, Nandi D. "Raman spectroscopy reveals distinct differences between two closely related bacterial strains, Mycobacterium indicus pranii and Mycobacterium intracellulare", Analytical and Bioanalytical Chemistry. DOI: 10.1007/s00216-019-02197-z
Mukherjee R, Verma T, Nandi D, Umapathy S. "Understanding the effects of culture conditions in bacterial growth: A biochemical perspective using Raman microscopy", Journal of Biophotonics. DOI: 10.1002/jbio.201900233
Prakash O, Sil S, Verma T, and Umapathy S. "Direct Detection of Bacteria Using Positively Charged Ag/Au Bimetallic Nanoparticles: A Label-free Surface-Enhanced Raman Scattering Study Coupled with Multivariate Analysis", The Journal of Physical Chemistry. DOI: 10.1021/acs.jpcc.9b09311
Yadav S, Verma T, Chattopadhyay A, Nandi D. "Factors affecting the pathophysiology of sepsis, an inflammatory disorder: Key roles of oxidative and nitrosative stress", Indian Journal of Inflammatory Research. DOI: 10.15305/ijir/v3i1/303
Datey A., Thaha A C S, Patil S, Gopalan J, Chakravortty D. "Shockwave therapy efficiently cures multispecies chronic periodontitis in a humanized rat model", Frontiers in Biotechnology and Bioengineering. DOI: 10.3389/fbioe.2019.00382
Kilinc AN, Kalathur RK, Sugiyama N, Antonaidis H, Birogul H, Ishay-Ronen D, George JT, Levine H, Jolly MK, Christofori G. "Histone deactylases, Mbd3/NuRD and Tet2 hydroxylase are crucial regulators of epithelial-mesenchymal plasticity and tumor metastasis", Oncogene. DOI: 10.1038/s41388-019-1081-2
Celia-Terrassa T, Jolly MK. "Cancer Stem Cells and Epithelial-to-Mesenchymal Transition in Cancer Metastasis", Spring Harb Perspect Med. DOI: 10.1101/cshperspect.a036905
Jolly MK, Celia-Terrassa T. "Dynamics of phenotypic heterogeneity associated with EMT and stemness during cancer progression", Journal of Clinical Medicine. DOI: 10.3390/jcm8101542
Lourenco AR, Ban Y, Crowley MJP, Lee S, Ramchandani D, Du W, Elemento O, George JT, Jolly MK, Levine H, Sheng J, Wong ST, Altorki NK, Gao D. "Differential contributions of pre- and post-EMT tumor cells in the breast to lung metastasis", Cancer Research. DOI: 10.1158/0008-5472.CAN-19-1427
Thangavel H, Angelis CD, Vasaikar S, Bhat R, Jolly MK, Nagi C, Creighton CJ, Chen F, Dobrolecki LE, George JT, Kumar T, Abdulkareem NM, Mao S, Nardone A, Rimawi M, Obsorne K, Lewis MT, Levine H, Zhang B, Schiff R, Giuliano M, Trivedi MV . "A CTC-cluster-specific signature derived from OMICS analysis of patient-derived xenograft tumors predicts outcomes in basal-like breast cancers", Journal of Clinical Medicine. DOI: 10.3390/jcm8111772
Kalvala A, Wallet P, Yang L, Wang C, Li H, Nam A, Nathan A, Mambetsariev I, Poroyko V, Gao H, Chu P, Sattler M, Bild A, Manuel ER, Lee PP, Jolly MK, Kulkarni P, Salgia R. "Phenotypic Switching of Naïve T cells to Immune-suppressive Treg-like Cells by Mutant KRAS", Journal of Clinical Medicine. DOI: 10.3390/jcm8101726
Kang T, Bocci F, Jolly MK, Levine H, Onuchic JN, Levchenko A. "Pericytes enable effective angiogenesis in the presence of pro-inflammatory signals", Proceedings of National Academy of Sciences USA (PNAS). DOI: 10.1073/pnas.1913373116
Agarwal A., Hari K V S, Arun S P. "Reading Increases the Compositionality of Visual Word Representations", Physiological Science. DOI: 10.1177/0956797619881134
Tirumala AN, Ananthanarayanan V. "Role of dynactin in the intracellular localization and activation of cytoplasmic dynein", ACS Biochemistry . DOI: 10.1021/acs.biochem.9b00772
Chacko LA, Mehta K, Ananthanarayanan V. "Cortical tethering of mitochondria by the anchor protein Mcp5 enables uniparental inheritance", The Journal of Cell Biology . DOI: 10.1083/jcb.201901108
Bocci F, Jolly MK, Onuchic JN. "A biophysical model uncovers the size distribution of migrating cell clusters across cancer types", Journal of Clinical Medicine, 8 (8): 1194, 2019. DOI: 10.1158/0008-5472.CAN-19-1726
Nath B, Bidkar AP, Kumar V, Dalal A, Jolly MK, Ghosh SS, Biswas G "Deciphering hydrodynamic and drug-resistant behaviors of metastatic EMT breast cancer cells moving in a constricted microcapillary", Journal of Clinical Medicine, 8 (8): 1194, 2019. DOI: 10.3390/jcm8081194
Saxena K, Subbalakshmi A R, Jolly MK "Phenotypic heterogeneity in circulating tumor cells and its prognostic value in metastasis and overall survival", EBiomedicine, 2019. DOI: j.ebiom.2019.07.074
Saxena K, Jolly MK " Acute vs. chronic vs. cyclic hypoxia: their differential dynamics, molecular mechanisms, and effects on tumor progression", Biomolecules, 9 (8): 339, 2019. DOI: 10.3390/biom9080339
Jia W, Deshmukh A, Mani SA, Jolly MK, Levine H "A possible role for epigenetic feedback regulation in the dynamics of the Epithelial-Mesenchymal Transition (EMT)", Physical Biology, 2019. DOI: 10.1088/1478-3975/ab34df
Mambetsariav I, Mirzapoiazova T, Lennon F, Jolly MK, Li H, Nasser MW, Vora L, Kulkarni P, Batra SK, Salgia R "Small cell lung cancer therapeutic responses through fractal measurements: from radiology to mitochondrial biology", Journal of Clinical Medicine, 8 (7): 1038, 2019. DOI: 10.3390/jcm8071038
Bocci F,Tripathi SC, Vilchez S, George JT, Casabar JC, Wong PK, Hanash SM, Levine H, Onuchic JN, Jolly MK "NRF2 inhibits a complete epithelial-mesenchymal transition and is maximally expressed in a hybrid epithelial/mesenchymal phenotype", Integrative Biology, 2019. DOI: 10.1093/intbio/zyz021
Varankar S, More M, Ancy A, Pansare K, Kumar B, Narayanan NJ, Jolly MK, Mali AM, Bapat SA "Functional balance between Tcf21-Slug defines cellular plasticity and migratory modalities in high grade serous ovarian cancer cell lines", Carcinogenesis, 2019. DOI: 10.1093/carcin/bgz119
Jia D, Li X, Bocci F, Tripathi S, Deng Y, Jolly MK, Onuchic JN, Levine H Quantifying cancer epithelial-mesenchymal plasticity and its association with stemness and immune response", Journal of Clinical Medicine, 8 (5): 725, 2019. DOI: 10.3390/jcm8050725
Lin X, Kulkarni P, Bocci F, Schafer N, Roy S, Tsai M-Y, He Y, Chen Y, Rajagopalan K, Mooney SM, Zeng Y, Weninger K, Grishaev A, Onuchic JN, Levine H, Wolynes PG, Salgia R, Rangarajan G, Uversky V, Orban J, Jolly MK "Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level", Biomolecules, 9(2): E77, 2019. DOI: 10.3390/biom9020077
Bocci F, Levine H, Onuchic JN, Jolly MK " Deciphering the dynamics of epithelial-hybrid-mesenchymal transition and cancer stem cells in tumor progression", Current Stem Cell Reports, 5 (1): 11-21, 2019. DOI: 10.1007/s40778-019-0150-3
Singh P., Lenka A., Stezin A., Jhunjhunwala K., Pal P.K., Ghoshal A., Murthy A. "Basal ganglia contributions during the learning of a visuomotor rotation: Effect of dopamine, deep brain stimulation and reinforcement", Europian Journal of Neurosciences, 2019. DOI: 10.1111/ejn.14494
Samantaray P.K., Madras G., Bose S. "The key role of modification to tweak the biointerfaces for antibacterial and antifouling properties in polymeric membranes for water remediation: A Critical Assessment", Advanced Sustainable Systems, 2019. DOI: 10.1002/adsu.201900017
Ilanila I. Ponmalar, Ramesh Cheerla, K. Ganapathy Ayappa and Jaydeep K. Basu "Correlated protein conformational states and membrane dynamics during attack by pore-forming toxins", PNAS, 2019. DOI: 10.1073/pnas.1821897116
Samantaray, P.K.; Madras, G.; Bose, S. "Water remediation aided by graphene oxide anchored metal-organic framework through pore and charge based sieving of ions", ACS Sustainable Chemistry & Engineering, 2019. DOI: 10.1021/acssuschemeng.8b05354
Samantaray, P.K.; Baloda, S; Madras, G.; Bose, S. "Interlocked dithi-magnetospheres decorated MoS2 nanosheets as molecular sieves and traps for heavy metal ion", Advanced Sustainable Systems, 2019. DOI: 10.1002/adsu.201800153
Nilkamal Pramanik, Santhalakshmi Ranganathan, Sunaina Rao, Kaushik Suneet, Shilpee Jain, Annapoorni Rangarajan and Siddharth Jhunjhunwala. "A Composite of Hyaluronic Acid-Modified Graphene Oxide and Iron Oxide Nanoparticles for Targeted Drug Delivery and Magnetothermal Therapy", ACS Omega, 2019,4,5,9284-9293. DOI: 10.1021/acsomega.9b00870
Ganapathy A, Mishra A, Soni MR, Kumar P, Sadagopan M, Kanthi AV, Patric IRP, George S, Sridharan A, Thyagarajan TC, Aswathy SL, Vidya HK, Chinnappa SM, Nayanala S, Prakash MB, Raghavendrachar VG, Parulekar M, Gowda VK, Nampoothiri S, Menon RN, Pachat D, Udani V, Naik N, Kamate M, Devi ARR, Mohammed Kunju PA, Nair M, Hegde AU, Kumar MP, Sundaram S, Tilak P, Puri RD, Shah K, Sheth J, Hasan Q, Sheth F, Agrawal P, Katragadda S, Veeramachaneni V, Chandru V, Hariharan R, Mannan AU. "Multi-gene testing in neurological disorders showed an improved diagnostic yield: data from over 1000 Indian patients", Journal of Neurology, 2019. DOI: 10.1007/s00415-019-09358-1
Deepesh Nagarajan, Natasha Roy, Omkar Kulkarni, Sathyabaarathi Ravichandran, Chandrani Thakur, Akshay Datey, Sandeep T., Indumathi V. Aprameya, Dipshikha Chakravortty, Nagasuma Chandra "W765: A computationally designed antimicrobial peptide to combat carbapenem and tigecycline resistant pathogens", Science Advances, 2019 (Accepted).
Umesh, S., Pant, S., Padma, S., Jana, S., Vasudevan, V., Murthy, A. and Asokan, S "A novel fiber Bragg grating system for eye tracking", Journal of advanced research, 2019, 16, pp.25-34. DOI: 10.1016/j.jare.2018.12.007
Krishna Kumar Singh, Neerupma Bhardwaj, Gaurav D. Sankhe, Niveda Udaykumar, Rambir Singh, Vandana Malhotra and Deepak Kumar Saini "Acetylation of Response Regulator Proteins, TcrX and MtrA in M. tuberculosis Tunes their Phosphotransfer Ability and Modulates Two-Component Signaling Crosstalk", Journal of Molecular Biology, 2019, 437(4): 777-793. DOI: 10.1016/j.jmb.2019.01.004
Kollaran, A.M., Joge, S., Kotian, H.S., Badal, D., Prakash, D., Mishra, A., Varma, M. and Singh, V. " Context-specific requirement of forty-four two-component loci in Pseudomonas aeruginosa swarming", iScience, 2019, 13: 305-317. DOI: 10.1016/j.isci.2019.02.028
Biswadeep Nayak, Gowri Manohari Balachander, Sathish Manjunath, Annapoorni Rangarajan and Kaushik Chatterjee "Tissue mimetic 3D scaffold for breast tumor-derived organoid culture toward personalized chemotherapy", Colloids and Surfaces B: Biointerfaces, 2019, 180: 334-343. DOI: 10.1016/j.colsurfb.2019.04.056
Venkata Subramanian Ramesan and Shilpee Jain "Chitosan−Glycerol Gel as Barrier Formulation for Metal Allergy", ACS Omega 2019, 4, 3, 5900-5903. DOI: 10.1021/acsomega.9b00326
Kaushik Suneet, Shreyas Sridhar, Purvi Agiwal, Mittanamalli S Sridhar, Kaustuv Sanyal and Shilpee Jain "Magnetic hyperthermia adjunctive therapy for fungi: in vitro studies against Candida albicans", International Journal of Hyperthermia, 2019. DOI: 10.1080/02656736.2019.1609705
S. Balakrishnan, S. S. Mathad, G. Sharma, U. B. Reddy, S. Das, and G.K. Ananthasuresh "A Nondimensional Model Reveals Alterations in Nuclear Mechanics upon Hepatitis C Virus Replication", Biophysical Journal, 2019. DOI: 10.1016/j.bpj.2019.02.013
M. K. Jolly, K. E. Ware, S. Xu, S. Gilja, S. Shetler, Y. Yang, X. Wang, R. G. Austin, D. Runyambo, A. J. Hish, S. B. DeWitt, J. T. George, R. T. Kreulen, Mary-Keara Boss, A. L. Lazarides, D. L. Kerr, D. G. Gerber, D. Sivaraj, A. J. Armstrong, M. W. Dewhirst, W. C. Eward, H. L. and J. A. Somarelli "E-cadherin represses anchorage-independent growth in sarcomas through both signaling and mechanical mechanismst", Molecular Cancer Research, 2019. DOI: 10.1158/1541-7786.MCR-18-0763
Xu S., Ware K.E., Ding Y., Kim S.Y., Sheth M.U., Rao S., Chan W., Armstrong A.J., Eward W.C., Jolly M.K., Somarelli J.A. "An integrative systems biology and experimental approach identifies convergence of epithelial plasticity, metabolism, and autophagy to promote chemoresistance", Journal of Clinical Medicine, 2019. DOI: 10.3390/jcm8020205
A. Shinde, S. D. Hardy, D. Kim, S. S. Akhand, M. K. Jolly, Wen-Hung Wang, J. C. Anderson, R. B. Khodadadi, W. S. Brown, J. T. George, S. Liu, J. Wan, H. Levine, C. D. Willey, C. J. Krusemark, R. L. Geahlen and M. K. Wendt "Spleen tyrosine kinase-mediated autophagy is required for epithelial-mesenchymal plasticity and metastasis in breast cancer", Cancer Research, 2019. DOI: 10.1158/0008-5472.CAN-18-2636
Lin X., Kulkarni P., Bocci F., Schafer N.P., Roy S., Tsai M.Y., He Y., Chen Y., Rajagopalan K., Mooney S.M., Zeng Y., Weninger K., Grishaev A., Onuchic J.N., Levine H., Wolynes P.G., Salgia R., Rangarajan G., Uversky V., Orban J., Jolly M.K. "Structural and dynamical order of a disordered protein: molecular insights into conformational switching of PAGE4 at the systems level", Biomolecules, 2019. DOI: 10.3390/biom9020077
Li X., Jolly M.K., George J.T., Pienta K.J., Levine H. "Computational modeling of the crosstalk between differently polarized macrophages and tumor cell plasticity in a tumor microenvironment", Frontiers in Oncology, 2019. DOI: 10.3389/fonc.2019.00010
Hewelt B., Li H., Jolly M.K., Kulkarni P., Mambetsariev I., Salgia R. "The DNA walk and its demonstration of deterministic chaos – relevance to genomic alterations in lung cancer", Bioinformatics, 2019. DOI: 10.1093/bioinformatics/bty1021
Preeti S., Devashish S., Varsha N., Vinidhra S. and Siddharth J. "Disparate effects of PEG or albumin based surface modification on uptake of nano- and micro-particles", Biomaterials Science, 2019. DOI: 10.1039/C8BM01545G
Kritika M., Leeba A. C., Manjyot K. C., Siddharth J. and Vaishnavi A. "Association of mitochondria with microtubules inhibits mitochondrial fission by precluding assembly of the fission protein Dnm1", Journal of Biological Chemistry, 2019. DOI: 10.1074/jbc.RA118.006799
Samantaray, P.K.; Bose, S. "Cationic Biocide Anchored Graphene Oxide-Based Membranes for Water Purification", Proc Indian Natn Sci Acad, 2018; pp 669-679. DOI: 10.16943/ptinsa/2018/49311
Samantaray, P.K.; Madras, G.; Bose, S. "PVDF/PBSA membranes with strongly coupled phosphonium derivatives and graphene oxide on the surface towards antibacterial and antifouling activities", Journal of Membrane Science 2018, 548, 203-214. DOI: 10.1016/j.memsci.2017.11.018
Samantaray, P.K.; Baloda, S.; Madras, G.; Bose, S. "A designer membrane tool-box with a mixed metal organic framework and RAFT-synthesized antibacterial polymer perform in tandem towards desalination, antifouling, and heavy metal exclusion.", Journal of Materials Chemistry A 2018, 6 (34), 16664-16679. DOI: 10.1039/C8TA05052J
Abinash Tripathy, Suman Pahal, Rajeev J Mudakavi, Ashok M. Raichur, Manoj M.Varma and Prosenjit Sen "Impact of Bioinspired Nanotopography on the Antibacterial and Antibiofilm Efficacy of Chitosan", ACS Biomacromolecules 19 (4), pp 1340–1346, 2018. DOI: 10.1021/acs.biomac.8b00200
Chawla M, Mishra S, Anand K, Parikh P, Mehta M, Vij M, Verma T, Singh P, Jakkala K, Verma H.N, AjitKumar P, Ganguli M, Narain Seshasayee AS and Singh A "Redox-dependent condensation of the mycobacterial nucleoid by WhiB4", Redox Biology 19: 116-133, 2018. DOI: 10.1016/j.redox.2018.08.006
Kuhar N, Sil S, Verma T & Umapathy S "Challenges in application of Raman spectroscopy to biology and materials", RSC advances 8: 25888-25908, 2018. DOI: 10.1039/C8RA04491K
Verma T, Bhaskarla C, Sadhir I, Sreedharan S & Nandi D "Non-steroidal anti-inflammatory drugs, acetaminophen and ibuprofen, induce phenotypic antibiotic resistance in Escherichia coli: roles of marA and acrB", FEMS Microbiology Letters 365: fny251, 2018. DOI: 10.1093/femsle/fny251
Jia D., George J.T., Tripathi S.C., Kundnani D.L., Lu M., Hanash S.M., Onuchic J.N., Jolly M.K., Levine H. "Testing the gene expression classification of the EMT spectrum", Physical Biology, 2018. DOI: 10.1088/1478-3975/aaf8d4
Bocci F., Gearhart-Serna L., Boareto M., Riberio M., Ben-Jacob E., Devi G.R., Levine H., Onuchic J.N., Jolly M.K. "Toward understanding cancer stem cell heterogeneity in the tumor microenvironment", PNAS, 2018. DOI: 10.1073/pnas.1815345116
Eapen M.S., Hansbro P.M., Callerfelt A-K L, Jolly M.K., Myers S., Sharma P., Markos J., Chia C., Larby J., Haug G., Hardikar A., Weber H.C., Mabeza G., Cavalheri V., Khor Y.H., McDonald C.F., Sohal S.S. "Chronic obstructive pulmonary disease (COPD) and lung cancer: underlying pathophysiology and new therapeutic modalities", Drugs, 2018, 78(16): 1717-1740. DOI: 10.1007/s40265-018-1001-8
K. Biswas, M. K. Jolly, A. Ghosh "Stability and mean residence times for hybrid epithelial/mesenchymal phenotype", Physical Biology, 2018. DOI: 10.1088/1478-3975/aaf7b7
Balachander G.M., Talukdar P.M., Debnath M., Rangarajan A., Chatterjee K "Inflammatory Role of Cancer Associated Fibroblasts in Invasive Breast Tumors Revealed Using a Fibrous Organotypic Scaffold", ACS Appl. Mater. Interfaces, 2018, 10(40), 33814–33826. DOI: 10.1021/acsami.8b07609
Mayuri Gogoi, Kasturi Chandra, Mohsen Sarikhani, Ramya Ramani, Nagalingam Ravi Sundareshan, Dipshikha Chakravortty "Salmonella escapes adaptive immune response via SIRT2 mediated modulation of innate immune response in dendritic cells", PLoS Pathogen, 2018 (Accepted).
A. Datey, M. Shreenivas, G. Chandrasekharan, J. Joseph, S. Sah, S. Aluri, S. Saha, U. Varshney and D. Chakravortty "Rewiring of one carbon metabolism in Salmonella serves as an excellent live vaccine against systemic salmonellosis", Vaccine, 2018. DOI: 10.1016/j.vaccine.2018.10.079
M. V. Surve, S. Bhutda, A. Datey, A. Anil, S. Rawat, A. Pushpakaran, D. Singh, K. S. Kim, D. Chakravortty and A. Banerjee "Heterogeneity in pneumolysin expression governs the fate of Streptococcus pneumoniae during blood-brain barrier trafficking", PLOS Pathogens, 2018. DOI: 10.1371/journal.ppat.1007168
A. Datey, D. Chakravortty and J. Gopalan "An overview of a novel use of shockwaves to alter cell permeability: Comment on “Shock wave-induced permeabilization of mammalian cells” by Luz M. López-Marín et al.", Physics of Life Reviews, 2018. DOI: 10.1016/j.plrev.2018.06.018
Z. Mohanta, H. S. Atreya and C. Srivastava "Correlation between defect density in mechanically milled graphite and total oxygen content of graphene oxide produced from oxidizing the milled graphite", Scientific Reports, 2018. DOI: 10.1038/s41598-018-34109-z
S. Naskar, A. K. Panda, V. Kumaran, B. Mehta, B. Basu "Controlled Shear Flow Directs Osteogenesis on UHMWPE-Based Hybrid Nanobiocomposites in a Custom-Designed PMMA Microfluidic Device", ACS Applied Bio Materials, 2018. DOI: 10.1021/acsabm.8b00147
S. Naskar, V. Kumaran, B. Basu "Reprogramming the Stem Cell Behavior by Shear Stress and Electric Field Stimulation: Lab-on-a-Chip Based Biomicrofluidics in Regenerative Medicine", Regenerative Engineering and Translational Medicine, 2018. DOI: 10.1007/s40883-018-0071-1
R. Agarwal, C.T. Johnson, B.R. Imhoff, R.M. Donlan, N.A. McCarty and A.J. García "Inhaled bacteriophage-loaded polymeric microparticles ameliorate acute lung infections", Nature Biomedical Engineering, 2018. DOI: 10.1038/s41551-018-0263-5
P. Sathyanarayana, S. Maurya, A. Behera, M. Ravichandran, S.S. Visweswariah, K.G. Ayappa and R. Roy "Cholesterol promotes Cytolysin A activity by stabilizing the intermediates during pore formation", PNAS, 2018. DOI: 10.1073/pnas.1721228115
C.T. Johnson, J.A. Wroe, R. Agarwal, K.E. Martin, R.E. Guldberg, R.M. Donlan, L.F. Westblade and A.J. García "Hydrogel delivery of lysostaphin eliminates orthopedic implant infection by Staphylococcus aureus and supports fracture healing", PNAS, 2018. DOI:10.1073/pnas.1801013115
A. H. Kulkarni, A. Chatterjee, P. Kondaiah, N. Gundiah "TGF-β induces changes in breast cancer cell deformability", Physical Biology, 2018. DOI:10.1088/1478-3975/aac3ba
S. Chatterjee, S. Kobylinski, B. Basu "Finite Element Analysis to Probe the Influence of Acetabular Shell Design, Liner Material, and Subject Parameters on Biomechanical Response in Periprosthetic Bone" ASME Journal of Biomechanical Engineering, Vol. 140, 2018. DOI: 10.1115/1.4040249
Roobala C., Ilanila I.P., Basu J.K. “Applications of STED fluorescence nanoscopy in unravelling nanoscale structure and dynamics of biological systems” Journal of Biosciences 2018. DOI : 10.1007/s12038-018-9764-3
Sankhe G.D., Dixit N.M., Saini D.K. “Activation of bacterial histidine kinases: Insights into the kinetics of the cis autophosphorylation mechanism” mSphere 3:e00111-18. DOI : 10.1128/mSphere.00111-18
A. Jain, J. Hasan, P.A. Desingu, N.R. Sundaresan, K. Chatterjee “Engineering an in vitro organotypic model for studying cardiac hypertrophy” Colloids and Surfaces B: Biointerfaces 2018, 165: 355–362. DOI : 10.1016/j.colsurfb.2018.02.036
Gowri Balachander, Balaji Rajashekar, Prasad MS, Annapoorni Rangarajan, and Kaushik Chatterjee, "MiRNomics Reveals Breast Cancer Cells Cultured on 3D Scaffolds Better Mimic Tumors in Vivo than Conventional 2D Culture", ACS Biomater. Sci. Eng. 2017 DOI: 10.1021/acsbiomaterials.7b00694
Pooyath Lekshmy Venugopalan, Shilpee Jain, Srinivasrao Shivashankar, and Ambarish Ghosh , "Single Coating of Zinc Ferrite Renders Magnetic Nanomotors Therapeutic and Stable against Agglomeration" Nanoscale 2017 DOI: 10.1039/C7NR08291F
Akshay Datey, Janardhanraj Subburaj, Jagadeesh Gopalan, Dipshikha Chakravortty, "Insights into the mechanism of a novel shockwave-assisted needle-free drug delivery device driven by in situ-generated oxyhydrogen mixture which provides efficient protection against Mycobacterial infections.", Journal of Biological Engineering,
Kollimada, S. A., Balakrishnan, S., Malhi, C., Raju, S., Matad, S., Das, S. & Ananthasuresh, G. K., "A micro-mechanical device for in situ stretching and high-magnification imaging of single cells cultured on it.", Journal of Micro-Bio Robotics (accepted)
N Padmavathy,Samantaray P. K., Ghosh L. D., Madras G., Bose S., "Selective Cleavage of Polyphosphoester in Crosslinked Copper based Nanogels: Enhanced Antibacterial Performance Through Controlled release of Copper", Nanoscale DOI: 10.1039/C7NR02446K
Samantaray P. K., Madras G., Bose S., "Antibacterial and antibiofouling polymeric membranes through immobilization of pyridine derivative leading to ROS generation and loss in bacterial membrane integrity", Chemistry Select (Accepted)
Datey, A.; Subburaj, R.; Gopalan, J.; Chakravortty, D., "Mechanism of transformation in Mycobacteria using a novel shockwave assisted technique driven by in-situ generated oxyhydrogen.", Scientific Reports DOI: 10.1038/s41598-017-08542-5
Dasgupta, Q.; Movva, S.; Chatterjee, K.; Madras,, "Controlled Release from Aspirin based Linear Biodegradable Poly(anhydride esters) for Anti-inflammatory Activity.", International Journal of Pharmaceutics 2017 DOI: 10.1016/j.ijpharm.2017.06.065
Naskar S, Kumaran V, Basu B, "On The Origin of Shear Stress Induced Myogenesis Using PMMA Based Lab-on-Chip", ACS Biomater. Sci. Eng. 2017 DOI: 10.1021/acsbiomaterials.7b00206
Jhunjhunwala S., Neutrophils at the Biological-Material Interface", ACS Biomater. Sci. Eng. 2017 DOI: 10.1021/acsbiomaterials.6b00743
J. M. Thankachan, S. S. Nuthalapati, N. A. Tirumala, V. Ananthanarayanan, "Fission yeast myosin I facilitates PI(4,5)P2-mediated anchoring of cytoplasmic dynein to the cortex", Proceedings of the National Academy of Sciences, 2017 DOI: 10.1073/pnas.1615883114
S. Meka, L. A. Chacko, A. Ravi, K. Chatterjee, V. Ananthanarayanan, "Role of Microtubules in Osteogenic Differentiation of Mesenchymal Stem Cells on 3D Nanofibrous Scaffolds", ACS Biomaterials Science and Engineering, 2017 DOI: 10.1021/acsbiomaterials.6b00725
A. Jain, V. Ravi, J. Muhamed, K. Chatterjee, N. R. Sundaresan, "A simplified protocol for culture of murine neonatal cardiomyocytes on nanoscale keratin coated surfaces", International Journal of Cardiology, 2017 DOI: 10.1016/j.ijcard.2017.01.036
R. Mudakavi, S. Vanamali, D. Chakravortty and A. M. Raichur, "Development of arginine based nanocarriers for targeting and treatment of intracellular Salmonella", RSC Adv., 2017 DOI: 10.1039/c6ra27868j
Q. Dasgupta, G. Madras and K. Chatterjee, "Controlled Release of Usnic Acid from Biodegradable Polyesters to Inhibit Biofilm Formation", ACS Biomaterials Science and Engineering, 2017 DOI: 10.1021/acsbiomaterials.6b00680
C. S. Tiwary, R. Mudakavi, S. Kishore, S. Kashyap, R. Elumalai, D. Chakravortty, A. M. Raichur and K. Chattopadhyay "Magnetic iron nanoparticles for in vivo targeted delivery and as biocompatible contrast agents", RSC Adv., 2016 DOI: 10.1039/C6RA14817D
P. Singh, S. Jana, A. Ghosal, A. Murthy "Exploration of joint redundancy but not task space variability facilitates supervised motor learning", PNAS, 2016 DOI: 10.1073/pnas.1613383113
P. Tiwari, S. Agarwal, S. Srivastava and S. Jain, "The combined effect of thermal and chemo-therapy on HeLa cells using magnetically actuated smart textured fibrous system", J Biomed Mater Res B. (in press)
J. Natarajan, Q. Dasgupta, S.N. Shetty, K. Sarkar, G. Madras, K. Chatterjee "Poly(ester amide)s from Soybean Oil for Modulated Release and Bone Regeneration", ACS Applied Materials & Interfaces, 2016 DOI: 10.1021/acsami.6b10382
P. Sathyanarayana, R. Desikan, G. Ayappa and S. S. Visweswariah, "The Solvent-Exposed C-Terminus of the Cytolysin A Pore-Forming Toxin Directs Pore Formation and Channel Function in Membranes", Biochemistry (in press) DOI: 10.1021/acs.biochem.6b00593
N. K. Sarangi, Ilanila I. P, K. G. Ayappa, S. S. Visweswariah, and J. K. Basu, "Super-resolution Stimulated Emission Depletion-Fluorescence Correlation Spectroscopy Reveals Nanoscale Membrane Reorganization Induced by Pore-Forming Proteins", Langmuir, 2016 DOI: 10.1021/acs.langmuir.6b01848
A. Datey, A. Thaha, S. R. Patil, G. Jagadeesh and D. Chakravortty, "Enhancing the efficiency of desensitizing agents with shockwave treatment – A new paradigm in dentinal hypersensitivity management", RSC Advances, 2016 DOI: 10.1039/C6RA12342B
R. Upadhyaya, S. Naskar, N. Bhaskar, S. Bose and B. Basu, "Modulation of Protein adsorption and Cell Proliferation on Polyethylene Immobilized Graphene Oxide Reinforced HDPE Bionanocomposites", ACS Applied Materials & Interfaces, 2016 DOI: 10.1021/acsami.6b00946
V. Ananthanarayanan, "Activation of the motor protein upon attachment: Anchors weigh in on cytoplasmic dynein regulation", Bioessays, 2016 DOI: 10.1002/bies.201600002
S. Jain, Book Review on "Dielectric Relaxation in Biological Systems: Physical Principles, Methods and Applications.", Current Science, 2016 (pdf)
C. Bhaskarla, M. Das, T. Verma, A. Kumar, S. Mahadevan, D. Nandi, "Roles of Lon protease and its substrate MarA during sodium salicylate-mediated growth reduction and antibiotic resistance in Escherichia coli.", Microbiology, 2016 DOI: 10.1099/mic.0.000271
G.B. Pai, A. Kulkarni and S. Jain, "Study of smart antibacterial PCL-xFe3O4 thin films using mouse NIH-3T3 fibroblast cells in vitro", J Biomed Mater Res B., 2016 DOI: 10.1002/jbm.b.33615
Q. Dasgupta, G. Madras and K. Chatterjee, "Controlled Release Kinetics of p-Aminosalicylic Acid from Biodegradable Crosslinked Polyesters for Enhanced Anti-mycobacterial Activity", Acta Biomaterialia, 2016 DOI: 10.1016/j.actbio.2015.11.032
Gautam R, Deobagkar-Lele M, Majumdar S, Chandrasekar B, Victor E, Ahmed SM, Wadhwa N, Verma T, Kumar S, Sundaresan NR, Umapathy S, Nandi D, " Molecular profiling of sepsis in mice using Fourier Transform Infrared Microspectroscopy.", J Biophotonics. 2016 Jan;9(1-2):67-82. DOI: 10.1002/jbio.201400089
Q. Dasgupta, K. Chatterjee and G. Madras, "Physical insights into salicylic acid release from poly(anhydrides)", Phys. Chem. Chem. Phys., 2015 DOI: 10.1039/C5CP06858D
G. Balachander, S. Balaji, A. Rangarajan, and K. Chatterjee, "Enhanced Metastatic Potential in a 3D Tissue Scaffold Toward a Comprehensive In Vitro Model for Breast Cancer Metastasis", ACS Appl. Mater. Interfaces, 2015 DOI: 10.1021/acsami.5b09064
M. Gogoi*, A. Datey*, K. Wilson, D. Chakravortty, "Dual role of arginine metabolism in establishing pathogenesis", Current Opinion in Microbiology, 2015 * Equal Contribution DOI: 10.1016/j.mib.2015.10.005
D. Gnanadhas, M. Elango, A. Datey and D. Chakravortty "Chronic lung infection by Pseudomonas aeruginosa biofilm is cured by L-Methionine in combination with antibiotic therapy", Scientific Reports, 2015 DOI: 10.1038/srep16043
D.P. Gnanadhas, M. Elango, A. Datey, S. Janardhanraj, C.S. Srinandan, R.A. Strugnell, J. Gopalan, D. Chakravortty, "Successful treatment of biofilm infections using shockwaves combined with antibiotic therapy", Scientific Reports, 2015 DOI: 10.1038/srep17440
S. Kumar, T. Verma, R. Mukherjee, F. Ariese, K. Somasundaram and S. Umapathy "Raman and infra-red microspectroscopy: towards quantitative evaluation for clinical research by ratiometric analysis", Chem Soc Rev, 2015 DOI: 10.1039/c5cs00540j
K. Radhakrishnan, J. Tripathy, A. Datey, D. Chakravortty and A. M. Raichur "Mesoporous silica–chondroitin sulphate hybrid nanoparticles for targeted and bio-responsive drug delivery", New J. Chem, 2015, 39, 1754-1760 DOI: 10.1039/C4NJ01430H
Q. Dasgupta, K. Chatterjee, and G. Madras, "Controlled Release of Salicylic Acid from Biodegradable Cross-linked Polyesters", Molecular Pharmaceutics, 2015, 12(9), 3479-3489. DOI: 10.1021/acs.molpharmaceut.5b00515
S. Balakrishnan, M. S. Suma, S. R. Raju, S. D. B. Bhargav, S. Arunima, S. Das and G. K. Ananthasuresh, "A Scalable Perfusion Culture System with Miniature Peristaltic Pumps for Live-Cell Imaging Assays with Provision for Microfabricated Scaffolds", BioRes Open Access, 2015, 4(1), 343–357. DOI: 10.1089/biores.2015.0024
V. Ananthanarayanan and I.M. Tolic , "Single-molecule imaging of cytoplasmic dynein in vivo", Methods Cell Biol., 2015, 125, 1-12. DOI: 10.1016/bs.mcb.2014.10.001
S. Jain, A. Sharma and B. Basu , "Vertical electric field induced bacterial growth inactivation on amorphous carbon electrodes", Carbon, 2015, 81, 193-202. DOI: 10.1016/j.carbon.2014.09.048
R. Mudakavi, A. M. Raichur, and D. Chakravortty , "Lipid coated mesoporous silica nanoparticle as oral delivery system for targeting and treatment of intravacuolar Salmonella infection", RSC Adv., 2014, 4, 61160-61166. DOI: 10.1039/C4RA12973C
M. S. Vaidyanathan, P. Sathyanarayana, P. K. Maiti, S. S. Visweswariah and K. G. Ayappa, "Lysis dynamics and membrane oligomerization pathways for Cytolysin A (ClyA) pore-forming toxin", RSC Adv., 2014, 4, 4930-4942. DOI: 10.1039/C3RA45159C
Q. Dasgupta, K. Chatterjee and G. Madras, "Combinatorial Approach to Develop Tailored Biodegradable Poly(xylitol dicarboxylate) Polyesters", Biomacromolecules, 2014, 15, 4302−4313. DOI: 10.1021/bm5013025
A. Jain, V. Ravi, J. Hasan, M. Behera, K. Chatterjee, NR Sundaresan "Surface Engineering Strategies to Study Diseases of Heart and Skeletal Muscle", Basic Cardiovascular Sciences 2019 Scientific Sessions: Innovating in Cardiovascular Research, Boston, MA, July 29 - August 1, 2019.
Gaurav D. Sankhe, Rubesh Raja, Narendra M. Dixit and Deepak K. Saini "Sequestration of histidine kinases by non-cognate response regulators: a novel regulatory motif in mycobacterial two-component signaling systems", Keystone Symposium, Tuberculosis: Mechanisms, Pathogenesis and Treatment, Banff, Canada, 2019.
Anjali Gupta and Varsha Singh "C. elegans – Bacteria interactions", BTMO, Bangalore, 2019.
Ilanila I. P., K. Ganapathy Ayappa, Jaydeep K. Basu "Study on interaction of lipids with pore-forming intermediates of listeriolysin O", National Workshop on Fluorescence and Raman Spectroscopy, New Delhi, India, 12-17 November 2018.
Reshma Vasantha Ramachandran, Debayan Dasgupta, Ramray Bhat, Deepak K. Saini, and Ambarish Ghosh "In vivo biocompatibility and biodistribution of magnetic nanomotors", 4th IEEE International Conference on Emerging Electronics, Bengaluru, India, 17-19 December, 2018.
Shivani Yadav, Kausthubha NK, Dipanjan Gope,Uma Maheswari Krishnaswamy, Prasanta Kumar Ghosh "Comparison of Cough, Wheeze and Sustained Phonations for Automatic Classification between Healthy subjects and Asthmatic patients", IEEE international conference Engineering in Medicine and Biology Society (EMBC), Honolulu, Hawaii, USA, 2018.
Chatterjee A., Kondaiah P., Gundiah N. "Fibroblast growth, remodelling, and stiffness changes due to actin and microtubule re-alignment under cyclic stretch", World Congress on Biomechanics, Dublin, 2018.
Kulkarni A. K., Chatterjee A., Kondaiah P., Gundiah N. "TGF-β induces changes in cell deformability depend on the cell invasive potential", World Congress on Biomechanics, Dublin, 2018.
Agrawal, A., Hari, K. V. S., and Arun, S. P. "How does reading expertise influence letter representations in the brain? An fMRI study", Journal of Vision, 18(10), 1161-1161, 2018.
Aditi Jain, Jafar Hasan, PA Designu, N. Ravi Sundaresan, Kaushik Chatterjee "Engineering an in vitro organotypic model for neonatal rat cardiomyocyte culture toward understanding cardiac hypertrophy", 29th Annual Meeting of the European Society for Biomaterials, Maastricht, Netherlands, 9 – 13 September, 2018.
Ilanila I. P., K. Ganapathy Ayappa, Jaydeep K. Basu "Connecting Lipid Dynamics with Listeriolysin O Pore Formation Intermediates Using Giant Unilamellar Vesicles", International Workshop on Biological Membranes: Tiny Lipids With Grand Functions, Helsinki, Finland, 19 - 22 August 2018.
Gaurav D. Sankhe, Narendra M. Dixit, Deepak K. Saini "A two-step cis mechanism of mycobacterial sensor kinase autophosphorylation revealed by mathematical modelling and high throughput assay ", Bacterial Networks (BacNet17), Sant Feliu de Guixols, Spain.
A. Jain, K. Chatterjee, N. R. Sundaresan "Engineered biomaterial surfaces for culturing neonatal murine cardiomyocytes toward understanding cardiac hypertrophy", Sixth Asian Biomaterials Congress (ABMC6), Trivandrum.
Kollimada, S. A., Khan, S., Balakrishnan, S., Raju, S., Matad, S., & Ananthasuresh, G. K. "A micro-mechanical compliant device for individual cell-stretching, compression, and in-situ force-measurement.", Manipulation, Automation and Robotics at Small Scales (MARSS), 2017 International Conference on (pp. 1-6). IEEE.
A. Jain, V. Ravi, J. Muhamed, K. Chatterjee, N. R. Sundaresan "Simplified protocol for culture of neonatal murine cardiomyocytes as a model to study cardiac hypertrophy using nanoscale coating of keratin derived from human hair.", International conference on Recent Advances in Cardiovascular Research : Impact on Health and Disease", 9-11 Feb, 2017 at Vallabhbhai Patel Chest Institute, University of Delhi
A. Jain, V. Ravi, J. Muhamed, K. Chatterjee, N. R. Sundaresan "Nanoscale keratin coated surfaces for neonatal murine cardiomyocyte culture", Second Annual Convention on Innovative and Emerging Biochemical and Biotechnological Tools to Augment Animal Health and Production, 2-3rd July 2017 at Veterinary College, Hebbal, Bengaluru.
Akshay Datey, Dipshikha Chakravortty, Gopalan Jagadeesh. "Shockwaves confer immunity against infections in mice.", 31st International Symposium on Shockwaves, Nagoya University, Japan, July 09-14 2017
Akshay Datey, Divyaprakash Gnanadhas, Dipshikha Chakravortty "Shockwaves can cure biofilm infections in-vivo in combination with antibiotics.", 31st International Symposium on Shockwaves, Nagoya University, Japan, July 09-14 2017.
Varsha V , Radhakant Padhi and Aditya Murthy “A Stochastic Feedback Model to Simulate Saccadic Eye Movement Variability”, 20th IFAC World Congress,Toulouse, France,2017
P. Singh, A. Lenka, A. Stezin, P.K. Pal, A. Ghosal, A. Murthy “Redundancy facilitates motor learning. Progress in Motor Control”,XI (PMC XI), Miami, Florida, July 19-22.
Rajeev J Mudakavi European Materials Research Society (E-MRS) Strasbourg, France -2017
Achuth Rao M V, Shivani Yadav, and Prasanta Kumar Ghosh “A dual source-filter model of snore audio for snorer group classification”,Interspeech 2017, Stockholm, Sweden
Achuth Rao M V, Kausthubha N K, S. Yadav, D. Gope, U.M. Krishnaswamy and P.K. Ghosh “Automatic Prediction of Spirometry Readings from Cough and Wheeze for Monitoring of Asthma Severity”, 25th European Signal Processing Conference(EUSIPCO) 2017, Kos island, Greece.
A. Chatterjee, N. Chahare, A. Kulkarni, P. Kondaiah, N. Gundiah “Design of a dynamic cell stretcher to quantify responses of fibroblasts to cyclic stretching and tgf-β”, 5 th International Conference on Computational and Mathematical Biomedical Engineering - CMBE2017, At University of Pittsburgh US, Volume: CMBE 2017 Proceedings Vol. 1.
Agrawal A, Hari KVS and Arun SP “How reading changes letter representations: a double dissociation using orthographically distinct scripts in India”, Vision Sciences Society Annual Meeting, Florida, 19- 24 May 2017
Q. Dasgupta, K. Chatterjee, G. Madras "Combinatorial Technique to Synthesize Bioactive Crosslinked Biodegradable Polyesters for Biomedical Applications", World Biomaterials Congress 2016, Montreal (Canada), May 2016
Akshay Datey, Janardhanraj Subburaj, Dipshikha Chakravortty, Gopalan Jagadeesh. "Bacterial Transformation and Vaccine Delivery using a solar powered miniature shock tube. ", 4th National Symposium on Shock Waves, February 25th & 26th 2016, Karunya University, India.
Balachander G.M., Balaji S.A., Rangarajan A., Chatterjee K “Study of breast cancer metastasis in vitro using a 3D tissue scaffold”, 10 th World Biomaterials Congress, Montreal, Canada. May 2016 DOI: 10.3389/conf.FBIOE.2016.01.00913
Varsha V , Radhakant Padhi and Aditya Murthy “Characterization of pulse-step input for saccadic eye movements.”, 2nd Indian Control Conference (ICC), IIT Hyderabad, January 2016
Verma T"Molecular Profiling of Sepsis : A Raman Spectroscopic Approach"; 9th International Conference on Perspectives in Vibrational Spectroscopy (ICOPVS), Lucknow, November 5-8, 2016.
Anjali Gupta, Deep Prakash, Varsha Singh"Investigating the Role of Amphid neurons of Caenorhabditis elegans in regulating the immune response against Gram positive and Gram negative bacteria"; Indian C. elegans meeting, Jan 2016.
Q. Dasgupta, K. Chatterjee, G. Madras "A Combinatorial Approach to Develop Tailored Biodegradable Poly(xylitol dicarboxylate) Polyesters",MACRO 2015, Kolkata, January 2015
Akshay Datey, Janardhanraj Subburaj, Dipshikha Chakravortty, Gopalan Jagadeesh. "Bacterial Transformation and Vaccine Delivery using a solar powered miniature shock tube. ", MCB75: From Molecules to Organisms, Platinum Jubilee Celebration at the Department of Microbiology & Cell Biology, Indian Institute of Science, India.
Akshay Datey, Janardhanraj Subburaj, Dipshikha Chakravortty, Gopalan Jagadeesh. "Effect of shock waves on the immune system (A host’s perspective).",The 30th International Symposium on Shock Waves, July 19-24 2015, Tel Aviv, Israel.
Rajeev J Mudakavi International Conference on Materials for Advanced Technologies (ICMAT), Singapore- 2015
Rajeev J Mudakavi MCB75: From Molecules to Organisms, Platinum Jubilee Celebration at the Department of Microbiology & Cell Biology, Indian Institute of Science, India.- Dec 2015
Q. Dasgupta, K. Chatterjee, G. Madras "Dicarboxylic acid based novel polyesters for biomedical applications",Polymeric Biomaterials, Bioengineering and Biodiagnostics, New Delhi, October 2014
Akshay Datey, Janardhanraj Subburaj, Dipshikha Chakravortty, Gopalan Jagadeesh. "Effect of shock waves on the immune system (A host’s perspective).",3rd National Symposium on Shock Waves, February 21st – 22nd 2014, Indian Institute of Technology-Bombay, India.
"Biomaterials Science and Tissue Engineering: Principles and Methods" by Bikramjit Basu, IIScPress and Cambridge University Press, 2017.
"Computational modeling of collective cell migration: mechanical and biochemical aspects" by Yang Y, Jolly MK, Levine H, Cell Migrations: Causes and Functions, AEMB, volume 1146, 2019.
"Microbial Biofilm Membranes for Water Remediation and Photobiocatalysis" by Samantaray PK, Madras G, Bose S, Next Generation Biomanufacturing Technologies, ACS Books, 2019.
"Understanding the Roles of Nitric Oxide During Sepsis, an Inflammatory Disorder" by Yadav S, Verma T, Pathak S, Nandi D, Therapeutic Application of Nitric Oxide in Cancer and Inflammatory Disorders, Academic Press, 2019, 243-276.
"GPCR Signaling in C. elegans and Its Implications in Immune Response" by Anjali Gupta, Varsha Singh, Advances in Immunology, Academic Press, 2017, Vol. 136, pp. 203-226.